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strip2 striatin interacting protein 2 [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117468462, updated on 19-Mar-2024

Summary

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Gene symbol
strip2
Gene description
striatin interacting protein 2
See related
EnsemblRapid:ENSPGEG00000024333
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
Orthologs
zebrafish all
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Genomic context

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See strip2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 23 NC_047525.1 (20784845..20816704)

Chromosome 23 - NC_047525.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 209 Neighboring gene adenosylhomocysteinase like 2b Neighboring gene MORN repeat containing 2 Neighboring gene DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047525.1 Chromosome 23 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
striatin-interacting protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047525.1 Reference fPseGeo1.1

    Range
    20784845..20816704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034112591.1 → XP_033968482.1  striatin-interacting protein 1 homolog isoform X3

    Conserved Domains (2) summary
    pfam07923
    Location:13 → 283
    N1221; N1221-like protein
    pfam11882
    Location:431 → 757
    DUF3402; Domain of unknown function (DUF3402)

  2. XM_034112588.1 → XP_033968479.1  striatin-interacting protein 1 homolog isoform X1

    Conserved Domains (2) summary
    pfam07923
    Location:43 → 313
    N1221; N1221-like protein
    pfam11882
    Location:461 → 787
    DUF3402; Domain of unknown function (DUF3402)

  3. XM_034112589.1 → XP_033968480.1  striatin-interacting protein 1 homolog isoform X2

    Related
    ENSPGEP00000057447.1, ENSPGET00000059525.1
    Conserved Domains (2) summary
    pfam07923
    Location:43 → 313
    N1221; N1221-like protein
    pfam11882
    Location:444 → 770
    DUF3402; Domain of unknown function (DUF3402)
Nucleotide Protein
Heading Accession and Version

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