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lrmp lymphoid-restricted membrane protein [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117468466, updated on 12-Sep-2024

Summary

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Gene symbol
lrmp
Gene description
lymphoid-restricted membrane protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
Orthologs
human zebrafish all
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Genomic context

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See lrmp in Genome Data Viewer
Location:
chromosome: 23
Exon count:
40
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 23 NC_047525.1 (18242619..18276444, complement)

Chromosome 23 - NC_047525.1Genomic Context describing neighboring genes Neighboring gene LYR motif containing 5a Neighboring gene cancer susceptibility 1 Neighboring gene transcription factor Sox-5-like Neighboring gene transcription factor SOX-5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047525.1 Chromosome 23 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphoid-restricted membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047525.1 Reference fPseGeo1.1

    Range
    18242619..18276444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034112596.1 → XP_033968487.1  lymphoid-restricted membrane protein isoform X1

    Conserved Domains (5) summary
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:958 → 1512
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH

  2. XM_034112601.1 → XP_033968492.1  lymphoid-restricted membrane protein isoform X5

    Conserved Domains (5) summary
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:1088 → 1500
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
    NF033845
    Location:902 → 1133
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  3. XM_034112597.1 → XP_033968488.1  lymphoid-restricted membrane protein isoform X2

    Conserved Domains (5) summary
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:1088 → 1511
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
    NF033845
    Location:902 → 1133
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  4. XM_034112598.1 → XP_033968489.1  lymphoid-restricted membrane protein isoform X3

    Conserved Domains (5) summary
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:958 → 1510
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH

  5. XM_034112604.1 → XP_033968495.1  lymphoid-restricted membrane protein isoform X8

    Conserved Domains (5) summary
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:958 → 1427
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH

  6. XM_034112602.1 → XP_033968493.1  lymphoid-restricted membrane protein isoform X6

    Conserved Domains (5) summary
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:958 → 1479
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH

  7. XM_034112603.1 → XP_033968494.1  lymphoid-restricted membrane protein isoform X7

    Conserved Domains (5) summary
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:958 → 1469
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH

  8. XM_034112600.1 → XP_033968491.1  lymphoid-restricted membrane protein isoform X4

    Conserved Domains (6) summary
    PHA03307
    Location:752 → 1069
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:1028 → 1503
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH

  9. XM_034112595.1 → XP_033968486.1  lymphoid-restricted membrane protein isoform X1

    Conserved Domains (5) summary
    PRK10856
    Location:849 → 955
    PRK10856; cytoskeleton protein RodZ
    pfam15921
    Location:330 → 745
    CCDC158; Coiled-coil domain-containing protein 158
    pfam05781
    Location:958 → 1512
    MRVI1; MRVI1 protein
    pfam14658
    Location:243 → 308
    EF-hand_9; EF-hand domain
    pfam14662
    Location:362 → 551
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
Nucleotide Protein
Heading Accession and Version

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