U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMIM42 small integral membrane protein 42 [ Homo sapiens (human) ]

Gene ID: 117981789, updated on 2-Nov-2024

Summary

Official Symbol
SMIM42provided by HGNC
Official Full Name
small integral membrane protein 42provided by HGNC
Primary source
HGNC:HGNC:55000
See related
Ensembl:ENSG00000288460 AllianceGenome:HGNC:55000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SMIM42 in Genome Data Viewer
Location:
1q23.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (158127287..158128301, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (157264374..157265385, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (158097077..158098091, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371459 Neighboring gene kirre like nephrin family adhesion molecule 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:157989127-157989812 Neighboring gene KIRREL1 intronic transcript 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:158015378-158015910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:158025579-158026153 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:158063276-158064475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1448 Neighboring gene long intergenic non-protein coding RNA 1704 Neighboring gene uncharacterized LOC105371460

Genomic regions, transcripts, and products

General protein information

Preferred Names
small integral membrane protein 42

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395415.1NP_001382344.1  small integral membrane protein 42

    Status: VALIDATED

    Source sequence(s)
    AL138899
    Consensus CDS
    CCDS91073.1
    UniProtKB/Swiss-Prot
    A0A5F9ZH02
    Related
    ENSP00000499955.1, ENST00000672824.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    158127287..158128301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    157264374..157265385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)