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Gm27179 predicted gene 27179 [ Mus musculus (house mouse) ]

Gene ID: 118567354, updated on 28-Oct-2024

Summary

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Official Symbol
Gm27179provided by MGI
Official Full Name
predicted gene 27179provided by MGI
Primary source
MGI:MGI:5521022
See related
Ensembl:ENSMUSG00000098773 AllianceGenome:MGI:5521022
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Synb
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Genomic context

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See Gm27179 in Genome Data Viewer
Location:
14 D2; 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (69745042..69753064, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene ectonucleoside triphosphate diphosphohydrolase 4 Neighboring gene predicted gene, 53864 Neighboring gene predicted gene, 16867 Neighboring gene predicted gene, 21451 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69896143-69896444 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69903084-69903385 Neighboring gene STARR-seq mESC enhancer starr_37056 Neighboring gene predicted gene, 41194 Neighboring gene predicted gene 27174 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69942500-69942801 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69943894-69944195 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69955006-69955307 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 4B Neighboring gene predicted gene, 53865

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000080.7 Chromosome 14 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins. Mangeney M, et al. Proc Natl Acad Sci U S A, 2007 Dec 18. PMID 18077339, Free PMC Article
  2. Genetic Evidence That Captured Retroviral Envelope syncytins Contribute to Myoblast Fusion and Muscle Sexual Dimorphism in Mice. Redelsperger F, et al. PLoS Genet, 2016 Sep. PMID 27589388, Free PMC Article
  3. Early patterning of the chorion leads to the trilaminar trophoblast cell structure in the placental labyrinth. Simmons DG, et al. Development, 2008 Jun. PMID 18448564, Free PMC Article
  4. A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast. Dupressoir A, et al. Proc Natl Acad Sci U S A, 2011 Nov 15. PMID 22032925, Free PMC Article
  5. Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae. Dupressoir A, et al. Proc Natl Acad Sci U S A, 2005 Jan 18. PMID 15644441, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
syncytin-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001388491.1 → NP_001375420.1  syncytin-B precursor

    Status: VALIDATED

    Source sequence(s)
    AC214054
    UniProtKB/Swiss-Prot
    Q8BI41, V9GXQ5
    Conserved Domains (1) summary
    pfam00429
    Location:360 → 551
    TLV_coat; ENV polyprotein (coat polyprotein)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    69745042..69753064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248109.1 → XP_030103969.1  syncytin-B isoform X1

    UniProtKB/Swiss-Prot
    Q8BI41, V9GXQ5
    Conserved Domains (1) summary
    pfam00429
    Location:360 → 551
    TLV_coat; ENV polyprotein (coat polyprotein)

  2. XM_030248107.1 → XP_030103967.1  syncytin-B isoform X1

    UniProtKB/Swiss-Prot
    Q8BI41, V9GXQ5
    Conserved Domains (1) summary
    pfam00429
    Location:360 → 551
    TLV_coat; ENV polyprotein (coat polyprotein)

  3. XM_030248108.1 → XP_030103968.1  syncytin-B isoform X1

    UniProtKB/Swiss-Prot
    Q8BI41, V9GXQ5
    Related
    ENSMUSP00000139267.2, ENSMUST00000184652.2
    Conserved Domains (1) summary
    pfam00429
    Location:360 → 551
    TLV_coat; ENV polyprotein (coat polyprotein)

  4. XM_030248110.1 → XP_030103970.1  syncytin-B isoform X1

    UniProtKB/Swiss-Prot
    Q8BI41, V9GXQ5
    Conserved Domains (1) summary
    pfam00429
    Location:360 → 551
    TLV_coat; ENV polyprotein (coat polyprotein)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BI41.1 GenPept UniProtKB/Swiss-Prot:Q8BI41

Gene LinkOut

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