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LOC118679652 tumor necrosis factor-like [ Myotis myotis ]

Gene ID: 118679652, updated on 30-Mar-2024

Summary

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Gene symbol
LOC118679652
Gene description
tumor necrosis factor-like
Locus tag
mMyoMyo1_019497
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis myotis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
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Genomic context

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See LOC118679652 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current mMyoMyo1.p (GCF_014108235.1) Unplaced Scaffold NW_023416331.1 (1117512..1120266, complement)

NW_023416331.1Genomic Context describing neighboring genes Neighboring gene leukocyte specific transcript 1 Neighboring gene lymphotoxin beta Neighboring gene NFKB inhibitor like 1 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene DExD-box helicase 39B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023416331 Unplaced Scaffold Reference mMyoMyo1.p Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CD40 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor-like
Names
tumor necrosis factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis myotis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMyoMyo1.p Primary Assembly

Genomic

  1. NW_023416331.1 Reference mMyoMyo1.p Primary Assembly

    Range
    1117512..1120266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036356660.1 → XP_036212553.1  tumor necrosis factor-like isoform X1

    Conserved Domains (1) summary
    pfam00229
    Location:107 → 238
    TNF; TNF(tumor Necrosis Factor) family

  2. XM_036356661.1 → XP_036212554.1  tumor necrosis factor-like isoform X2

    UniProtKB/TrEMBL
    A0A7J7RKW7
    Conserved Domains (1) summary
    pfam00229
    Location:106 → 237
    TNF; TNF(tumor Necrosis Factor) family
Nucleotide Protein
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