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LOC118936543 zinc finger protein PLAGL2-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 118936543, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118936543
Gene description
zinc finger protein PLAGL2-like
See related
Ensembl:ENSOMYG00000074223
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
plagl2
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Genomic context

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See LOC118936543 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 16 NC_048580.1 (70127253..70133280, complement)

Chromosome 16 - NC_048580.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein kinase HCK Neighboring gene transmembrane 9 superfamily member 4 Neighboring gene uncharacterized LOC118939578 Neighboring gene uncharacterized LOC110492666

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048580.1 Chromosome 16 Reference USDA_OmykA_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein PLAGL2-like
Names
pleiomorphic adenoma protein-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048580.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    70127253..70133280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036947683.1 → XP_036803578.1  zinc finger protein PLAGL2-like

    UniProtKB/TrEMBL
    A0A8K9WRW4
    Related
    ENSOMYP00000119792.1, ENSOMYT00000153219.1
    Conserved Domains (3) summary
    COG5189
    Location:76 → 157
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    COG5236
    Location:128 → 254
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:54 → 74
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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