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pacs2 phosphofurin acidic cluster sorting protein 2 [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119034497, updated on 21-Mar-2024

Summary

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Gene symbol
pacs2
Gene description
phosphofurin acidic cluster sorting protein 2
See related
EnsemblRapid:ENSALTG00010028444
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
human zebrafish all
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Genomic context

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See pacs2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
28
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 16 NC_051054.1 (5671346..5721194, complement)

Chromosome 16 - NC_051054.1Genomic Context describing neighboring genes Neighboring gene actinin, alpha 1 Neighboring gene ddb1 and cul4 associated factor 5 Neighboring gene deubiquitinase DESI2 Neighboring gene serine and arginine rich splicing factor 5a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051054.1 Chromosome 16 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphofurin acidic cluster sorting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051054.1 Reference fAcaLat1.1 Primary Assembly

    Range
    5671346..5721194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037125562.1 → XP_036981457.1  phosphofurin acidic cluster sorting protein 2 isoform X1

    Related
    ENSALTP00010073214.1, ENSALTT00010082460.1
    Conserved Domains (1) summary
    pfam10254
    Location:465 → 886
    Pacs-1; PACS-1 cytosolic sorting protein

  2. XM_037125566.1 → XP_036981461.1  phosphofurin acidic cluster sorting protein 2 isoform X4

    Related
    ENSALTP00010073206.1, ENSALTT00010082452.1
    Conserved Domains (1) summary
    pfam10254
    Location:465 → 874
    Pacs-1; PACS-1 cytosolic sorting protein

  3. XM_037125564.1 → XP_036981459.1  phosphofurin acidic cluster sorting protein 2 isoform X3

    Conserved Domains (1) summary
    pfam10254
    Location:465 → 875
    Pacs-1; PACS-1 cytosolic sorting protein

  4. XM_037125563.1 → XP_036981458.1  phosphofurin acidic cluster sorting protein 2 isoform X2

    Related
    ENSALTP00010073207.1, ENSALTT00010082453.1
    Conserved Domains (1) summary
    pfam10254
    Location:465 → 885
    Pacs-1; PACS-1 cytosolic sorting protein

  5. XM_037125567.1 → XP_036981462.1  phosphofurin acidic cluster sorting protein 2 isoform X5

    Related
    ENSALTP00010073203.1, ENSALTT00010082449.1
    Conserved Domains (1) summary
    pfam10254
    Location:435 → 856
    Pacs-1; PACS-1 cytosolic sorting protein

  6. XM_037125568.1 → XP_036981463.1  phosphofurin acidic cluster sorting protein 2 isoform X6

    Conserved Domains (1) summary
    pfam10254
    Location:323 → 744
    Pacs-1; PACS-1 cytosolic sorting protein
Nucleotide Protein
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