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srsf5a serine and arginine rich splicing factor 5a [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119034499, updated on 21-Mar-2024

Summary

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Gene symbol
srsf5a
Gene description
serine and arginine rich splicing factor 5a
See related
EnsemblRapid:ENSALTG00010028445
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
zebrafish all
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Genomic context

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See srsf5a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 16 NC_051054.1 (5723577..5729292, complement)

Chromosome 16 - NC_051054.1Genomic Context describing neighboring genes Neighboring gene ddb1 and cul4 associated factor 5 Neighboring gene phosphofurin acidic cluster sorting protein 2 Neighboring gene deubiquitinase DESI2 Neighboring gene synaptojanin 2 binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051054.1 Chromosome 16 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine and arginine rich splicing factor 5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051054.1 Reference fAcaLat1.1 Primary Assembly

    Range
    5723577..5729292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037125572.1 → XP_036981467.1  serine and arginine rich splicing factor 5a isoform X2

    Related
    ENSALTP00010073218.1, ENSALTT00010082464.1
    Conserved Domains (2) summary
    cd12337
    Location:5 → 72
    RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:116 → 187
    RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

  2. XM_037125570.1 → XP_036981465.1  serine and arginine rich splicing factor 5a isoform X1

    Conserved Domains (2) summary
    cd12337
    Location:5 → 72
    RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:119 → 190
    RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

  3. XM_037125571.1 → XP_036981466.1  serine and arginine rich splicing factor 5a isoform X1

    Conserved Domains (2) summary
    cd12337
    Location:5 → 72
    RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:119 → 190
    RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
Nucleotide Protein
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