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pcnt pericentrin [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119034503, updated on 12-Sep-2024

Summary

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Gene symbol
pcnt
Gene description
pericentrin
See related
EnsemblRapid:ENSALTG00010027030
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
human zebrafish all
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Genomic context

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See pcnt in Genome Data Viewer
Location:
chromosome: 16
Exon count:
62
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 16 NC_051054.1 (5910036..5944183)

Chromosome 16 - NC_051054.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 177 Neighboring gene SPARC related modular calcium binding 1 Neighboring gene solute carrier family 2, facilitated glucose transporter member 1 Neighboring gene uncharacterized LOC119034261 Neighboring gene transformer-2 protein homolog beta-like Neighboring gene SUMO specific peptidase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051054.1 Chromosome 16 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pericentrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051054.1 Reference fAcaLat1.1 Primary Assembly

    Range
    5910036..5944183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037125577.1 → XP_036981472.1  pericentrin isoform X1

    Conserved Domains (5) summary
    PTZ00121
    Location:1434 → 2115
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:2828 → 3692
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK04863
    Location:3518 → 3908
    mukB; chromosome partition protein MukB
    TIGR02168
    Location:2308 → 3124
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10495
    Location:3940 → 4017
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

  2. XM_037125581.1 → XP_036981476.1  pericentrin isoform X5

    Related
    ENSALTP00010070779.1, ENSALTT00010078872.1
    Conserved Domains (5) summary
    PTZ00121
    Location:1434 → 2115
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:2828 → 3692
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK04863
    Location:3518 → 3908
    mukB; chromosome partition protein MukB
    TIGR02168
    Location:2308 → 3124
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10495
    Location:3940 → 4017
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

  3. XM_037125578.1 → XP_036981473.1  pericentrin isoform X2

    Related
    ENSALTP00010070778.1, ENSALTT00010078871.1
    Conserved Domains (5) summary
    PTZ00121
    Location:1434 → 2115
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:2821 → 3685
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK04863
    Location:3511 → 3901
    mukB; chromosome partition protein MukB
    TIGR02168
    Location:2308 → 3119
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10495
    Location:3933 → 4010
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

  4. XM_037125579.1 → XP_036981474.1  pericentrin isoform X3

    Conserved Domains (5) summary
    PTZ00121
    Location:805 → 1332
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:1726 → 2474
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK04863
    Location:3510 → 3900
    mukB; chromosome partition protein MukB
    TIGR02168
    Location:2300 → 3116
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10495
    Location:3932 → 4009
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

  5. XM_037125580.1 → XP_036981475.1  pericentrin isoform X4

    Conserved Domains (5) summary
    PTZ00121
    Location:1424 → 2105
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:2818 → 3682
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK04863
    Location:3508 → 3898
    mukB; chromosome partition protein MukB
    TIGR02168
    Location:2298 → 3114
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10495
    Location:3930 → 4007
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

  6. XM_037125582.1 → XP_036981477.1  pericentrin isoform X6

    Related
    ENSALTP00010070781.1, ENSALTT00010078874.1
    Conserved Domains (5) summary
    PTZ00121
    Location:1424 → 2105
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:2811 → 3675
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK04863
    Location:3501 → 3891
    mukB; chromosome partition protein MukB
    TIGR02168
    Location:2298 → 3107
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10495
    Location:3923 → 4000
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
Nucleotide Protein
Heading Accession and Version

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