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Rbcn-3A rabconnectin-3 alpha [ Rhipicephalus microplus (southern cattle tick) ]

Gene ID: 119188295, updated on 9-Oct-2024

Summary

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Gene symbol
Rbcn-3A
Gene description
rabconnectin-3 alpha
See related
VectorBase:LOC119188295; EnsemblRapid:LOC119188295
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhipicephalus microplus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
Orthologs
fruit fly all
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Genomic context

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See Rbcn-3A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
59
Annotation release Status Assembly Chr Location
100 current ASM1333972v1 (GCF_013339725.1) 1 NC_051165.1 (274790654..274913103)

Chromosome 1 - NC_051165.1Genomic Context describing neighboring genes Neighboring gene dual oxidase 2-like Neighboring gene dual oxidase maturation factor 1-like Neighboring gene protein C1orf43 homolog Neighboring gene sorting nexin 27

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051165.1 Chromosome 1 Reference ASM1333972v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RAVE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: dmX-like protein 2
Names
dmX-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1333972v1 Primary Assembly

Genomic

  1. NC_051165.1 Reference ASM1333972v1 Primary Assembly

    Range
    274790654..274913103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037436266.1 → XP_037292163.1  LOW QUALITY PROTEIN: dmX-like protein 2

    Related
    XP_037292163.1, XM_037436266.1
    Conserved Domains (4) summary
    smart00320
    Location:192 → 221
    WD40; WD40 repeats
    sd00039
    Location:3212 → 3248
    7WD40; WD40 repeat [structural motif]
    pfam12234
    Location:1720 → 2072
    Rav1p_C; RAVE protein 1 C terminal
    cl29593
    Location:3201 → 3462
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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