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LOC119193853 probable asparagine--tRNA ligase, mitochondrial [ Manduca sexta (tobacco hornworm) ]

Gene ID: 119193853, updated on 14-Dec-2023

Summary

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Gene symbol
LOC119193853
Gene description
probable asparagine--tRNA ligase, mitochondrial
Locus tag
O3G_MSEX002586
See related
EnsemblRapid:ENSMSXG00000007842
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
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Genomic context

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See LOC119193853 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 7 NC_051121.1 (2143782..2145988, complement)

Chromosome 7 - NC_051121.1Genomic Context describing neighboring genes Neighboring gene protein YIPF1 Neighboring gene uncharacterized LOC115455557 Neighboring gene Krueppel homolog 2 Neighboring gene ribosomal protein S3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051121.1 Chromosome 7 Reference JHU_Msex_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables asparagine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in asparaginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable asparagine--tRNA ligase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051121.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    2143782..2145988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037447695.1 → XP_037303592.1  probable asparagine--tRNA ligase, mitochondrial

    UniProtKB/TrEMBL
    A0A922CDH2
    Related
    ENSMSXP00000011233.1, ENSMSXT00000012973.1
    Conserved Domains (1) summary
    PRK03932
    Location:22 → 462
    asnC; asparaginyl-tRNA synthetase; Validated
Nucleotide Protein
Heading Accession and Version

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