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Snx1 sorting nexin 1 [ Dermacentor silvarum ]

Gene ID: 119442842, updated on 3-Jul-2024

Summary

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Gene symbol
Snx1
Gene description
sorting nexin 1
See related
VectorBase:DSIL_089997; EnsemblRapid:LOC119442842
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermacentor silvarum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Dermacentor
Orthologs
fruit fly all
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Genomic context

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See Snx1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
101 current BIME_Dsil_1.4 (GCF_013339745.2) 2 NC_051155.1 (230601157..230628494)
100 previous assembly ASM1333974v1 (GCF_013339745.1) 2 NC_051155.1 (230601181..230628494)

Chromosome 2 - NC_051155.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119442840 Neighboring gene myotubularin-related protein 10 Neighboring gene integrator complex subunit 3 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene protein fem-1 homolog B Neighboring gene ubiquitin-conjugating enzyme E2 Q2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermacentor silvarum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Dsil_1.4 Primary Assembly

Genomic

  1. NC_051155.1 Reference BIME_Dsil_1.4 Primary Assembly

    Range
    230601157..230628494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049662420.1 → XP_049518377.1  sorting nexin-2 isoform X2

    Related
    XP_049518377.1, XM_049662420.1

  2. XM_037707883.2 → XP_037563811.1  sorting nexin-2 isoform X1

    Related
    XP_037563811.1, XM_037707883.2
    Conserved Domains (2) summary
    cd06859
    Location:119 → 242
    PX_SNX1_2_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2
    cd07623
    Location:271 → 494
    BAR_SNX1_2; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2
Nucleotide Protein
Heading Accession and Version

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