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LOC119599514 nucleoporin SEH1-like [ Penaeus monodon (black tiger shrimp) ]

Gene ID: 119599514, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119599514
Gene description
nucleoporin SEH1-like
See related
EnsemblRapid:LOC119599514
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus monodon
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC119599514 in Genome Data Viewer
Location:
chromosome: 43
Exon count:
7
Annotation release Status Assembly Chr Location
100 current NSTDA_Pmon_1 (GCF_015228065.1) 43 NC_051428.1 (7293972..7299635)

Chromosome 43 - NC_051428.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 2-like Neighboring gene ragulator complex protein LAMTOR1-like Neighboring gene methylenetetrahydrofolate reductase-like Neighboring gene pantetheinase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051428.1 Chromosome 43 Reference NSTDA_Pmon_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Seh1-associated complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin SEH1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus monodon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NSTDA_Pmon_1 Primary Assembly

Genomic

  1. NC_051428.1 Reference NSTDA_Pmon_1 Primary Assembly

    Range
    7293972..7299635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037949274.1 → XP_037805202.1  nucleoporin SEH1-like isoform X1

    Related
    XP_037805202.1, XM_037949274.1
    Conserved Domains (2) summary
    sd00039
    Location:15 → 55
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:11 → 313
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_037949275.1 → XP_037805203.1  nucleoporin SEH1-like isoform X2

    Related
    XP_037805203.1, XM_037949275.1
    Conserved Domains (2) summary
    sd00039
    Location:15 → 55
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:11 → 305
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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