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LOC120066618 ADP-ribosylation factor-binding protein GGA3-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120066618, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120066618
Gene description
ADP-ribosylation factor-binding protein GGA3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120066618 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 2 NC_052308.1 (66955698..66963447, complement)

Chromosome 2 - NC_052308.1Genomic Context describing neighboring genes Neighboring gene jupiter microtubule associated homolog 1-like Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene growth factor receptor-bound protein 2-like Neighboring gene melanin-concentrating hormone receptor 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052308.1 Chromosome 2 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-binding protein GGA3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052308.1 Reference SaNama_1.0 Primary Assembly

    Range
    66955698..66963447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039018047.1 → XP_038873975.1  ADP-ribosylation factor-binding protein GGA3-like isoform X1

    UniProtKB/TrEMBL
    A0A8U1HAA9
    Conserved Domains (4) summary
    smart00809
    Location:600 → 714
    Alpha_adaptinC2; Adaptin C-terminal domain
    pfam18308
    Location:169 → 207
    GGA_N-GAT; GGA N-GAT domain
    cd14240
    Location:213 → 299
    GAT_GGA3; canonical GAT domain found in ADP-ribosylation factor-binding protein GGA3
    cl02544
    Location:6 → 145
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  2. XM_039018055.1 → XP_038873983.1  ADP-ribosylation factor-binding protein GGA3-like isoform X2

    UniProtKB/TrEMBL
    A0A8U1FCC2
    Conserved Domains (4) summary
    smart00809
    Location:587 → 701
    Alpha_adaptinC2; Adaptin C-terminal domain
    pfam18308
    Location:156 → 194
    GGA_N-GAT; GGA N-GAT domain
    cd14240
    Location:200 → 286
    GAT_GGA3; canonical GAT domain found in ADP-ribosylation factor-binding protein GGA3
    cl02544
    Location:30 → 132
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version

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