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LOC120066663 netrin-1-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120066663, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120066663
Gene description
netrin-1-like
See related
EnsemblRapid:ENSSNMG00000047988
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120066663 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 2 NC_052308.1 (67275392..67364756, complement)

Chromosome 2 - NC_052308.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 24-like Neighboring gene syntaxin-8-like Neighboring gene phosphoinositide 3-kinase regulatory subunit 5-like Neighboring gene phosphoinositide 3-kinase regulatory subunit 6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052308.1 Chromosome 2 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052308.1 Reference SaNama_1.0 Primary Assembly

    Range
    67275392..67364756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039018100.1 → XP_038874028.1  netrin-1-like

    UniProtKB/TrEMBL
    A0A8U1FCE7
    Related
    ENSSNMP00000070605.1, ENSSNMT00000076653.1
    Conserved Domains (4) summary
    smart00136
    Location:45 → 282
    LamNT; Laminin N-terminal domain (domain VI)
    cd00055
    Location:283 → 328
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03579
    Location:486 → 600
    NTR_netrin-1_like; NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration ...
    pfam00053
    Location:403 → 440
    Laminin_EGF; Laminin EGF domain
Nucleotide Protein
Heading Accession and Version

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