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LOC120066821 patatin-like phospholipase domain-containing protein 6 [ Salvelinus namaycush (lake trout) ]

Gene ID: 120066821, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120066821
Gene description
patatin-like phospholipase domain-containing protein 6
See related
EnsemblRapid:ENSSNMG00000046435
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120066821 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
35
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 2 NC_052308.1 (67644240..67685660, complement)

Chromosome 2 - NC_052308.1Genomic Context describing neighboring genes Neighboring gene mitochondrial glycine transporter B Neighboring gene myosin-9-like Neighboring gene homeobox protein MSH-C-like Neighboring gene neuronal vesicle trafficking-associated protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052308.1 Chromosome 2 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052308.1 Reference SaNama_1.0 Primary Assembly

    Range
    67644240..67685660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039018277.1 → XP_038874205.1  patatin-like phospholipase domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8U1FCU2
    Related
    ENSSNMP00000068315.1, ENSSNMT00000074144.1
    Conserved Domains (2) summary
    cd07225
    Location:932 → 1237
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:601 → 709
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  2. XM_039018278.1 → XP_038874206.1  patatin-like phospholipase domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8U1FDH6
    Conserved Domains (2) summary
    cd07225
    Location:932 → 1237
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:601 → 709
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  3. XM_039018279.1 → XP_038874207.1  patatin-like phospholipase domain-containing protein 6 isoform X3

    UniProtKB/TrEMBL
    A0A8U1FD61
    Conserved Domains (2) summary
    cd07225
    Location:815 → 1120
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:484 → 592
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein
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