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RT1-O1l1 RT1 class Ib, locus O1 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 120093125, updated on 2-Nov-2024

Summary

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Official Symbol
RT1-O1l1provided by RGD
Official Full Name
RT1 class Ib, locus O1 like 1provided by RGD
Primary source
RGD:41288091
See related
EnsemblRapid:ENSRNOG00000082801 AllianceGenome:RGD:41288091
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in antigen processing and presentation and immune response. Predicted to be located in lumenal side of endoplasmic reticulum membrane and phagocytic vesicle membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See RT1-O1l1 in Genome Data Viewer
Location:
20p12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (2627434..2664895)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (2624073..2658023)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene RT1 class I, locus CE15, pseudogene 1 Neighboring gene RT1 class I, locus V1, pseudogene 1 Neighboring gene ribosomal protein S2, pseudogene 2 Neighboring gene RT1 class I, locus O3, pseudogene Neighboring gene RT1 class I, locus O2, pseudogene Neighboring gene histocompatibility 2, Q region locus 7 like, pseudogene 1 Neighboring gene uncharacterized LOC134483846 Neighboring gene RT1 class Ib, locus N2 Neighboring gene RT1 class Ib, locus S2 Neighboring gene ribosomal protein S2, pseudogene 1 Neighboring gene RT1 class Ib, locus O1 Neighboring gene RT1 class Ib, locus N3 Neighboring gene RT1 class Ib, locus S3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
  
involved_in immune response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in lumenal side of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
H-2 class I histocompatibility antigen, Q7 alpha chain-like
Names
H-2 class I histocompatibility antigen, Q9 alpha chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    2627434..2664895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099257.2 → XP_038955185.1  H-2 class I histocompatibility antigen, Q7 alpha chain-like

    UniProtKB/TrEMBL
    A0A8J8Y6P7
    Conserved Domains (3) summary
    pfam00129
    Location:26 → 203
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:338 → 363
    MHC_I_C; MHC_I C-terminus
    cd07698
    Location:208 → 299
    IgC1_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain, alpha3 immunoglobulin domain; member of the C1-set of Ig superfamily (IgSF) domains

  2. XM_039099256.2 → XP_038955184.1  H-2 class I histocompatibility antigen, Q7 alpha chain-like

    UniProtKB/TrEMBL
    A0A8J8Y6P7
    Related
    ENSRNOP00000105343.1, ENSRNOT00000036147.9
    Conserved Domains (3) summary
    pfam00129
    Location:26 → 203
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:338 → 363
    MHC_I_C; MHC_I C-terminus
    cd07698
    Location:208 → 299
    IgC1_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain, alpha3 immunoglobulin domain; member of the C1-set of Ig superfamily (IgSF) domains

  3. XM_039099255.2 → XP_038955183.1  H-2 class I histocompatibility antigen, Q7 alpha chain-like

    UniProtKB/TrEMBL
    A0A8J8Y6P7
    Conserved Domains (3) summary
    pfam00129
    Location:26 → 203
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:338 → 363
    MHC_I_C; MHC_I C-terminus
    cd07698
    Location:208 → 299
    IgC1_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain, alpha3 immunoglobulin domain; member of the C1-set of Ig superfamily (IgSF) domains
Nucleotide Protein Strain
Heading Accession and Version

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