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Potef POTE ankyrin domain family, member F [ Rattus norvegicus (Norway rat) ]

Gene ID: 120098222, updated on 18-Sep-2024

Summary

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Symbol
Potefprovided by RGD
Full Name
POTE ankyrin domain family, member Fprovided by RGD
Primary source
RGD:1584390
See related
EnsemblRapid:ENSRNOG00000015035 AllianceGenome:RGD:1584390
Gene type
pseudo
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in retina homeostasis. Orthologous to human POTEF (POTE ankyrin domain family member F). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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See Potef in Genome Data Viewer
Location:
18p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (23900710..24602964, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (23787211..23806982, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 33 Neighboring gene SFT2 domain containing 3 Neighboring gene LIM zinc finger domain containing 2 Neighboring gene G protein-coupled receptor 17 Neighboring gene uncharacterized LOC134482980 Neighboring gene myosin VIIb Neighboring gene uncharacterized LOC134482924 Neighboring gene interacts with SUPT6H, CTD assembly factor 1 Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa Neighboring gene mitogen activated protein kinase kinase kinase 2 Neighboring gene ERCC excision repair 3, TFIIH core complex helicase subunit Neighboring gene uncharacterized LOC120098229 Neighboring gene bridging integrator 1 Neighboring gene testis expressed 51 Neighboring gene uncharacterized LOC120098297 Neighboring gene uncharacterized LOC120098296 Neighboring gene large ribosomal subunit protein eL19-like Neighboring gene small nucleolar RNA SNORA17 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ribosomal protein S27a, pseudogene 12 Neighboring gene uncharacterized LOC120098181 Neighboring gene glycophorin C Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene transfer RNA alanine (anticodon AGC) 30 Neighboring gene thymic stromal lymphopoietin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an acrosome protein VAD1.2/AEP2 which is differentially expressed in spermatogenesis. Lee KF, et al. Mol Hum Reprod, 2008 Aug. PMID 18621766
  2. The testis-specific VAD1.3/AEP1 interacts with β-actin and syntaxin 1 and directs peri-nuclear/Golgi expression with bipartite nucleus localization (BNL) sequence. Zuo Y, et al. Biochem Biophys Res Commun, 2010 Oct 15. PMID 20850414
  3. Shotgun proteomics reveals specific modulated protein patterns in tears of patients with primary open angle glaucoma naïve to therapy. Pieragostino D, et al. Mol Biosyst, 2013 Jun. PMID 23580065
  4. Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics. Yang W, et al. J Proteome Res, 2012 Feb 3. PMID 22082260, Free PMC Article
  5. Proteomic analysis of microvesicles from plasma of healthy donors reveals high individual variability. Bastos-Amador P, et al. J Proteomics, 2012 Jun 27. PMID 22516433

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
POTE ankyrin domain family member F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_242782.1 

    Range
    101..1228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    23900710..24602964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063277647.1 → XP_063133717.1  POTE ankyrin domain family member F

  2. XM_063277646.1 → XP_063133716.1  POTE ankyrin domain family member F

    Related
    ENSRNOP00000107388.1, ENSRNOT00000116978.2

  3. XM_063277645.1 → XP_063133715.1  POTE ankyrin domain family member F

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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