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CHL1 cell adhesion molecule L1 like [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120409599, updated on 21-Mar-2024

Summary

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Gene symbol
CHL1
Gene description
cell adhesion molecule L1 like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
33
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 7 NC_052629.1 (113871345..114057168, complement)

Linkage Group 7 - NC_052629.1Genomic Context describing neighboring genes Neighboring gene contactin 4 Neighboring gene contactin-6-like Neighboring gene contactin 3 Neighboring gene uncharacterized LOC120409140

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052629.1 Chromosome 7 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule L1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052629.1 Reference ASM1616193v1 Primary Assembly

    Range
    113871345..114057168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039548076.1 → XP_039404010.1  neural cell adhesion molecule L1-like protein isoform X4

    Conserved Domains (7) summary
    smart00409
    Location:548 → 635
    IG; Immunoglobulin
    cd00063
    Location:943 → 1035
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:742 → 823
    fn3; Fibronectin type III domain
    pfam13882
    Location:1132 → 1213
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:35 → 39
    Ig; Ig strand A [structural motif]
    cd05845
    Location:136 → 225
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:35 → 127
    Ig; Immunoglobulin domain

  2. XM_039548074.1 → XP_039404008.1  neural cell adhesion molecule L1-like protein isoform X4

    Conserved Domains (7) summary
    smart00409
    Location:548 → 635
    IG; Immunoglobulin
    cd00063
    Location:943 → 1035
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:742 → 823
    fn3; Fibronectin type III domain
    pfam13882
    Location:1132 → 1213
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:35 → 39
    Ig; Ig strand A [structural motif]
    cd05845
    Location:136 → 225
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:35 → 127
    Ig; Immunoglobulin domain

  3. XM_039548073.1 → XP_039404007.1  neural cell adhesion molecule L1-like protein isoform X3

    Conserved Domains (7) summary
    smart00409
    Location:562 → 649
    IG; Immunoglobulin
    cd00063
    Location:957 → 1049
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:756 → 837
    fn3; Fibronectin type III domain
    pfam13882
    Location:1146 → 1227
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

  4. XM_039548078.1 → XP_039404012.1  neural cell adhesion molecule L1-like protein isoform X6

    Conserved Domains (7) summary
    smart00409
    Location:578 → 665
    IG; Immunoglobulin
    cd00063
    Location:973 → 1065
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:772 → 853
    fn3; Fibronectin type III domain
    pfam13882
    Location:1108 → 1189
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

  5. XM_039548072.1 → XP_039404006.1  neural cell adhesion molecule L1-like protein isoform X2

    Conserved Domains (7) summary
    smart00410
    Location:578 → 665
    IG_like; Immunoglobulin like
    cd00063
    Location:973 → 1065
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:772 → 853
    fn3; Fibronectin type III domain
    pfam13882
    Location:1162 → 1243
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

  6. XM_039548077.1 → XP_039404011.1  neural cell adhesion molecule L1-like protein isoform X5

    Conserved Domains (7) summary
    smart00410
    Location:589 → 676
    IG_like; Immunoglobulin like
    cd00063
    Location:984 → 1076
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:783 → 864
    fn3; Fibronectin type III domain
    pfam13882
    Location:1119 → 1200
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

  7. XM_039548071.1 → XP_039404005.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (7) summary
    smart00409
    Location:589 → 676
    IG; Immunoglobulin
    cd00063
    Location:984 → 1076
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:783 → 864
    fn3; Fibronectin type III domain
    pfam13882
    Location:1173 → 1254
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

  8. XM_039548070.1 → XP_039404004.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (7) summary
    smart00409
    Location:589 → 676
    IG; Immunoglobulin
    cd00063
    Location:984 → 1076
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:783 → 864
    fn3; Fibronectin type III domain
    pfam13882
    Location:1173 → 1254
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

  9. XM_039548069.1 → XP_039404003.1  neural cell adhesion molecule L1-like protein isoform X1

    Conserved Domains (7) summary
    smart00409
    Location:589 → 676
    IG; Immunoglobulin
    cd00063
    Location:984 → 1076
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:783 → 864
    fn3; Fibronectin type III domain
    pfam13882
    Location:1173 → 1254
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:76 → 80
    Ig; Ig strand A [structural motif]
    cd05845
    Location:177 → 266
    IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:76 → 168
    Ig; Immunoglobulin domain

RNA

  1. XR_005601363.1 RNA Sequence

  2. XR_005601364.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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