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LOC120409606 pulmonary surfactant-associated protein A-like [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120409606, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120409606
Gene description
pulmonary surfactant-associated protein A-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
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Genomic context

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See LOC120409606 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 7 NC_052629.1 (56400115..56451846, complement)

Linkage Group 7 - NC_052629.1Genomic Context describing neighboring genes Neighboring gene pulmonary surfactant-associated protein A1-like Neighboring gene pulmonary surfactant-associated protein A-like Neighboring gene mannose-binding protein-like Neighboring gene mannose-binding protein-like Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene pulmonary surfactant-associated protein D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052629.1 Chromosome 7 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein A-like; pulmonary surfactant-associated protein A1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052629.1 Reference ASM1616193v1 Primary Assembly

    Range
    56400115..56451846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039548133.1 → XP_039404067.1  pulmonary surfactant-associated protein A1-like isoform X4

    Conserved Domains (2) summary
    pfam01391
    Location:66 → 99
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:135 → 247
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_039548131.1 → XP_039404065.1  pulmonary surfactant-associated protein A1-like isoform X3

    Conserved Domains (2) summary
    pfam01391
    Location:56 → 100
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:136 → 248
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_039548132.1 → XP_039404066.1  pulmonary surfactant-associated protein A1-like isoform X3

    Conserved Domains (2) summary
    pfam01391
    Location:56 → 100
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:136 → 248
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  4. XM_039548136.1 → XP_039404070.1  pulmonary surfactant-associated protein A-like isoform X6

    Conserved Domains (2) summary
    pfam01391
    Location:76 → 118
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:154 → 213
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  5. XM_039548134.1 → XP_039404068.1  pulmonary surfactant-associated protein A-like isoform X5

    Conserved Domains (2) summary
    cd03591
    Location:121 → 233
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:43 → 85
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_039548127.1 → XP_039404061.1  pulmonary surfactant-associated protein A-like isoform X1

    Conserved Domains (2) summary
    cd03591
    Location:154 → 266
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:76 → 118
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_039548129.1 → XP_039404063.1  pulmonary surfactant-associated protein A-like isoform X2

    Conserved Domains (2) summary
    cd03591
    Location:136 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:31 → 100
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_039548128.1 → XP_039404062.1  pulmonary surfactant-associated protein A-like isoform X2

    Conserved Domains (2) summary
    cd03591
    Location:136 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:31 → 100
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_039548130.1 → XP_039404064.1  pulmonary surfactant-associated protein A-like isoform X2

    Conserved Domains (2) summary
    cd03591
    Location:136 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:31 → 100
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_039548137.1 → XP_039404071.1  pulmonary surfactant-associated protein A-like isoform X7

    Conserved Domains (2) summary
    cd03591
    Location:71 → 183
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:2 → 35
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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