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LOC120713899 putative germin-like protein 12-4 [ Panicum virgatum (switchgrass) ]

Gene ID: 120713899, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120713899
Gene description
putative germin-like protein 12-4
Locus tag
PVAP13_6KG048705
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120713899 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
2
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (9507110..9508167)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene putative germin-like protein 12-4 Neighboring gene putative germin-like protein 12-4 Neighboring gene putative germin-like protein 12-4 Neighboring gene germin-like protein 8-11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative germin-like protein 12-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    9507110..9508167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039999863.1 → XP_039855797.1  putative germin-like protein 12-4

    UniProtKB/TrEMBL
    A0A8T0R8I1
    Conserved Domains (1) summary
    cd02241
    Location:24 → 220
    cupin_OxOx; Oxalate oxidase (germin), cupin domain
Nucleotide Protein Strain
Heading Accession and Version

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