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LOC120713909 ABC transporter B family member 2-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120713909, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120713909
Gene description
ABC transporter B family member 2-like
Locus tag
PVAP13_1KG460705
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120713909 in Genome Data Viewer
Location:
chromosome: 1K
Exon count:
9
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 1K NC_053136.1 (47487558..47495905, complement)

Chromosome 1K - NC_053136.1Genomic Context describing neighboring genes Neighboring gene WEB family protein At3g02930, chloroplastic-like Neighboring gene uncharacterized membrane protein At4g09580-like Neighboring gene uncharacterized LOC120713921 Neighboring gene F-box/LRR-repeat protein At1g06630-like Neighboring gene histone acetyltransferase MCC1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053136.1 Chromosome 1K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter B family member 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053136.1 Reference P.virgatum_v5 Primary Assembly

    Range
    47487558..47495905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039999874.1 → XP_039855808.1  ABC transporter B family member 2-like

    UniProtKB/TrEMBL
    A0A8T0X309, A0A8T0XH20
    Conserved Domains (1) summary
    PTZ00265
    Location:43 → 1243
    PTZ00265; multidrug resistance protein (mdr1); Provisional
Nucleotide Protein Strain
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