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PHLDA1-DT PHLDA1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 120766142, updated on 28-Oct-2024

Summary

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Official Symbol
PHLDA1-DTprovided by HGNC
Official Full Name
PHLDA1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55470
See related
AllianceGenome:HGNC:55470
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PHLDA1-DT in Genome Data Viewer
Location:
12q21.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (76031813..76034389)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (76006890..76009471)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (76425593..76428169)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369847 Neighboring gene Sharpr-MPRA regulatory region 1339 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6674 Neighboring gene pleckstrin homology like domain family A member 1 Neighboring gene PHLDA1 antisense RNA 1 Neighboring gene nucleosome assembly protein 1 like 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:76447490-76447990 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:76449120-76450032 Neighboring gene DENR pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4665 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4666 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4667 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:76478195-76478736 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4669 Neighboring gene uncharacterized LOC124902970

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185978.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011611

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    76031813..76034389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    76006890..76009471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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