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ryr3 ryanodine receptor 3 [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120808424, updated on 10-Oct-2024

Summary

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Gene symbol
ryr3
Gene description
ryanodine receptor 3
See related
Ensembl:ENSGACG00000007942
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
Orthologs
human zebrafish all
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Genomic context

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See ryr3 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
110
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 18 NC_053229.1 (6866529..6950995, complement)

Chromosome 18 - NC_053229.1Genomic Context describing neighboring genes Neighboring gene muscarinic acetylcholine receptor M5-like Neighboring gene ER membrane protein complex subunit 7b Neighboring gene apoptosis, caspase activation inhibitor Neighboring gene uncharacterized LOC120808193 Neighboring gene uncharacterized LOC120808181

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053229.1 Chromosome 18 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ryanodine-sensitive calcium-release channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in smooth endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ryanodine receptor 3
Names
ryanodine receptor 3-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053229.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    6866529..6950995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040161331.1 → XP_040017265.1  ryanodine receptor 3 isoform X5

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:273 → 363
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:640 → 791
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1070 → 1202
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1321 → 1456
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  2. XM_040161330.1 → XP_040017264.1  ryanodine receptor 3 isoform X4

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Related
    ENSGACP00000010568.2, ENSGACT00000010590.2
    Conserved Domains (4) summary
    smart00472
    Location:278 → 368
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:645 → 796
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1075 → 1207
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1326 → 1461
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  3. XM_040161329.1 → XP_040017263.1  ryanodine receptor 3 isoform X3

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:280 → 370
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:647 → 798
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1077 → 1209
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1328 → 1463
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  4. XM_040161328.1 → XP_040017262.1  ryanodine receptor 3 isoform X2

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:285 → 375
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:652 → 803
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1082 → 1214
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1333 → 1468
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  5. XM_040161327.1 → XP_040017261.1  ryanodine receptor 3 isoform X1

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:285 → 375
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:652 → 803
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1082 → 1214
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1333 → 1468
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  6. XM_040161333.1 → XP_040017267.1  ryanodine receptor 3 isoform X7

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:285 → 375
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:652 → 803
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1082 → 1214
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1333 → 1468
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  7. XM_040161341.1 → XP_040017275.1  ryanodine receptor 3 isoform X15

    UniProtKB/TrEMBL
    A0AAQ4PGR7, A0AAQ4R7H2
    Related
    ENSGACP00000038079.1, ENSGACT00000041316.1
    Conserved Domains (4) summary
    smart00472
    Location:273 → 363
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:640 → 791
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1070 → 1202
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1321 → 1456
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  8. XM_040161339.1 → XP_040017273.1  ryanodine receptor 3 isoform X13

    UniProtKB/TrEMBL
    A0AAQ4P8X0, A0AAQ4R7H2
    Related
    ENSGACP00000035270.1, ENSGACT00000040464.1
    Conserved Domains (4) summary
    smart00472
    Location:273 → 363
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:640 → 791
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1070 → 1202
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1321 → 1456
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  9. XM_040161338.1 → XP_040017272.1  ryanodine receptor 3 isoform X12

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Related
    ENSGACP00000059634.1, ENSGACT00000062760.1
    Conserved Domains (4) summary
    smart00472
    Location:273 → 363
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:640 → 791
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1070 → 1202
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1321 → 1456
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  10. XM_040161340.1 → XP_040017274.1  ryanodine receptor 3 isoform X14

    UniProtKB/TrEMBL
    A0AAQ4R7H2, A0AAQ4RFU2
    Related
    ENSGACP00000062616.1, ENSGACT00000055852.1
    Conserved Domains (4) summary
    smart00472
    Location:280 → 370
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:647 → 798
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1077 → 1209
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1328 → 1463
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  11. XM_040161336.1 → XP_040017270.1  ryanodine receptor 3 isoform X10

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:285 → 375
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:652 → 803
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1082 → 1214
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1333 → 1468
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  12. XM_040161334.1 → XP_040017268.1  ryanodine receptor 3 isoform X8

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:285 → 375
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:652 → 803
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1082 → 1214
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1333 → 1468
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  13. XM_040161335.1 → XP_040017269.1  ryanodine receptor 3 isoform X9

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:285 → 375
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:652 → 803
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1082 → 1214
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1333 → 1468
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  14. XM_040161332.1 → XP_040017266.1  ryanodine receptor 3 isoform X6

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:261 → 351
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:628 → 779
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1058 → 1190
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1309 → 1444
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)

  15. XM_040161337.1 → XP_040017271.1  ryanodine receptor 3 isoform X11

    UniProtKB/TrEMBL
    A0AAQ4R7H2
    Conserved Domains (4) summary
    smart00472
    Location:280 → 370
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    cd12877
    Location:647 → 798
    SPRY1_RyR; SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)
    cd12878
    Location:1077 → 1209
    SPRY2_RyR; SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)
    cd12879
    Location:1328 → 1463
    SPRY3_RyR; SPRY domain 3 (SPRY3) of ryanodine receptor (RyR)
Nucleotide Protein Strain
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