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LOC121272153 leucine-rich repeat-containing protein 49 [ Carcharodon carcharias (great white shark) ]

Gene ID: 121272153, updated on 22-Mar-2024

Summary

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Gene symbol
LOC121272153
Gene description
leucine-rich repeat-containing protein 49
See related
EnsemblRapid:ENSCHSG00020020817
Gene type
protein coding
RefSeq status
MODEL
Organism
Carcharodon carcharias
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
Orthologs
zebrafish all
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Genomic context

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See LOC121272153 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
19
Annotation release Status Assembly Chr Location
100 current sCarCar2.pri (GCF_017639515.1) 32 NC_054498.1 (318016..562693, complement)

Chromosome 32 - NC_054498.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type-1 domain-containing protein 4-like Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC121272113 Neighboring gene La ribonucleoprotein 6, translational regulator a Neighboring gene TM2 domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054498.1 Chromosome 32 Reference sCarCar2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sCarCar2.pri Primary Assembly

Genomic

  1. NC_054498.1 Reference sCarCar2.pri Primary Assembly

    Range
    318016..562693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041178664.1 → XP_041034598.1  leucine-rich repeat-containing protein 49 isoform X2

    Related
    ENSCHSP00020036464.1, ENSCHST00020040449.1
    Conserved Domains (2) summary
    sd00033
    Location:98 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:89 → 289
    internalin_A; class 1 internalin InlA

  2. XM_041178665.1 → XP_041034599.1  leucine-rich repeat-containing protein 49 isoform X3

    Related
    ENSCHSP00020036513.1, ENSCHST00020040500.1
    Conserved Domains (2) summary
    sd00033
    Location:174 → 195
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:157 → 259
    internalin_A; class 1 internalin InlA

  3. XM_041178663.1 → XP_041034597.1  leucine-rich repeat-containing protein 49 isoform X1

    Related
    ENSCHSP00020036499.1, ENSCHST00020040486.1
    Conserved Domains (2) summary
    sd00033
    Location:156 → 175
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:147 → 347
    internalin_A; class 1 internalin InlA

  4. XM_041178666.1 → XP_041034600.1  leucine-rich repeat-containing protein 49 isoform X4

    Conserved Domains (2) summary
    sd00033
    Location:74 → 93
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:65 → 265
    internalin_A; class 1 internalin InlA

  5. XM_041178667.1 → XP_041034601.1  leucine-rich repeat-containing protein 49 isoform X5

    Conserved Domains (2) summary
    sd00031
    Location:10 → 31
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:4 → 73
    internalin_A; class 1 internalin InlA
Nucleotide Protein
Heading Accession and Version