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LOC121815976 Sharpr-MPRA regulatory region 360 [ Homo sapiens (human) ]

Gene ID: 121815976, updated on 10-Oct-2023

Summary

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Gene symbol
LOC121815976
Gene description
Sharpr-MPRA regulatory region 360
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in K562 erythroleukemia cells (group: K562 Activating DNase unmatched - State 14:Gen5', transcription transition, highly expressed genes towards 5' end). [provided by RefSeq, Jul 2021]
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Genomic context

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See LOC121815976 in Genome Data Viewer
Location:
10q
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (125149300..125149594)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (126030332..126030626)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (126837869..126838163)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126688910-126689410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126691205-126691746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126691747-126692287 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126696421-126696926 Neighboring gene C-terminal binding protein 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126715397-126715939 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:126729801-126730300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126736559-126737142 Neighboring gene microRNA 4296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126740341-126741097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126746343-126747091 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126747092-126747839 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:126750177-126750378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126751552-126752149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126767335-126767836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126770120-126770948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126770949-126771776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126773433-126774260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126775917-126776743 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126791223-126792047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126795355-126795874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126801041-126801540 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126805494-126806319 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126824413-126825010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126826210-126826808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126826809-126827407 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2923 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126840048-126841009 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:126849903-126850512 Neighboring gene mitochondrial ribosomal protein S21 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126881561-126882062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4192 Neighboring gene VISTA enhancer hs330 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:126915977-126917176 Neighboring gene uncharacterized LOC105378541 Neighboring gene NANOG hESC enhancer GRCh37_chr10:126918015-126918529 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:126919634-126920833

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. Ernst J, et al. Nat Biotechnol, 2016 Nov. PMID 27701403, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_075870.1 

    Range
    101..395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    125149300..125149594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    126030332..126030626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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