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LOC122274132 sec-independent protein translocase protein TATA, chloroplastic [ Carya illinoinensis ]

Gene ID: 122274132, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122274132
Gene description
sec-independent protein translocase protein TATA, chloroplastic
Locus tag
CIPAW_08G123500
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122274132 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 8 NC_056759.1 (25078560..25083722, complement)

Chromosome 8 - NC_056759.1Genomic Context describing neighboring genes Neighboring gene transcription factor UNE12-like Neighboring gene uncharacterized LOC122274436 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056759.1 Chromosome 8 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein transport by the Tat complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sec-independent protein translocase protein TATA, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056759.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    25078560..25083722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043083099.1 → XP_042939033.1  sec-independent protein translocase protein TATA, chloroplastic isoform X1

    Conserved Domains (1) summary
    cl00788
    Location:123 → 205
    MttA_Hcf106; mttA/Hcf106 family

  2. XM_043083100.1 → XP_042939034.1  sec-independent protein translocase protein TATA, chloroplastic isoform X2

    Conserved Domains (1) summary
    cl00788
    Location:123 → 165
    MttA_Hcf106; mttA/Hcf106 family

RNA

  1. XR_006228228.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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