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LOC122281393 probable WRKY transcription factor 2 [ Carya illinoinensis ]

Gene ID: 122281393, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122281393
Gene description
probable WRKY transcription factor 2
Locus tag
CIPAW_11G211300
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122281393 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (45402603..45407380)

Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis protein 5 Neighboring gene uncharacterized LOC122282885 Neighboring gene COP9 signalosome complex subunit 6a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    45402603..45407380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043092837.1 → XP_042948771.1  probable WRKY transcription factor 2

    UniProtKB/TrEMBL
    A0A8T1PAB2, A0A922DTR7
    Conserved Domains (2) summary
    smart00774
    Location:537 → 594
    WRKY; DNA binding domain
    pfam03106
    Location:321 → 375
    WRKY; WRKY DNA -binding domain
Nucleotide Protein
Heading Accession and Version

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