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LOC122281445 COP9 signalosome complex subunit 6a [ Carya illinoinensis ]

Gene ID: 122281445, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122281445
Gene description
COP9 signalosome complex subunit 6a
Locus tag
CIPAW_11G211400
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122281445 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (45448473..45460955, complement)

Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122282885 Neighboring gene probable WRKY transcription factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deneddylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COP9 signalosome complex subunit 6a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    45448473..45460955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043092924.1 → XP_042948858.1  COP9 signalosome complex subunit 6a

    UniProtKB/TrEMBL
    A0A8T1P6S3
    Conserved Domains (1) summary
    cd08063
    Location:9 → 315
    MPN_CSN6; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6
Nucleotide Protein
Heading Accession and Version

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