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LOC122283022 general transcription and DNA repair factor IIH subunit TFB5 [ Carya illinoinensis ]

Gene ID: 122283022, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122283022
Gene description
general transcription and DNA repair factor IIH subunit TFB5
Locus tag
CIPAW_11G146300
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122283022 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (38316050..38318405, complement)

Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122280799 Neighboring gene uncharacterized LOC122280800 Neighboring gene protein cornichon homolog 4-like Neighboring gene uncharacterized protein At4g22758-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, preincision complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH subunit TFB5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    38316050..38318405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043095157.1 → XP_042951091.1  general transcription and DNA repair factor IIH subunit TFB5

    UniProtKB/TrEMBL
    A0A8T1NZF4
    Conserved Domains (1) summary
    pfam06331
    Location:2 → 70
    Tfb5; Transcription factor TFIIH complex subunit Tfb5

  2. XM_043095158.1 → XP_042951092.1  general transcription and DNA repair factor IIH subunit TFB5

    UniProtKB/TrEMBL
    A0A8T1NZF4
    Conserved Domains (1) summary
    pfam06331
    Location:2 → 70
    Tfb5; Transcription factor TFIIH complex subunit Tfb5

  3. XM_043095160.1 → XP_042951094.1  general transcription and DNA repair factor IIH subunit TFB5

    UniProtKB/TrEMBL
    A0A8T1NZF4
    Conserved Domains (1) summary
    pfam06331
    Location:2 → 70
    Tfb5; Transcription factor TFIIH complex subunit Tfb5

  4. XM_043095159.1 → XP_042951093.1  general transcription and DNA repair factor IIH subunit TFB5

    UniProtKB/TrEMBL
    A0A8T1NZF4
    Conserved Domains (1) summary
    pfam06331
    Location:2 → 70
    Tfb5; Transcription factor TFIIH complex subunit Tfb5
Nucleotide Protein
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