U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC122283027 UBP1-associated protein 2C-like [ Carya illinoinensis ]

Gene ID: 122283027, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC122283027
Gene description
UBP1-associated protein 2C-like
Locus tag
CIPAW_11G162600
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC122283027 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (40226345..40233338)

Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like Neighboring gene uncharacterized LOC122281655 Neighboring gene uncharacterized LOC122283024 Neighboring gene protein trichome birefringence-like 31 Neighboring gene tRNA dimethylallyltransferase 9

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
UBP1-associated protein 2C-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    40226345..40233338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043095175.1 → XP_042951109.1  UBP1-associated protein 2C-like

    UniProtKB/TrEMBL
    A0A8T1P3H8, A0A922IZY4
    Conserved Domains (3) summary
    PLN03134
    Location:187 → 271
    PLN03134; glycine-rich RNA-binding protein 4; Provisional
    smart00360
    Location:74 → 141
    RRM; RNA recognition motif
    COG0724
    Location:67 → 210
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  2. XM_043095176.1 → XP_042951110.1  UBP1-associated protein 2C-like

    UniProtKB/TrEMBL
    A0A8T1P3H8, A0A922IZY4
    Conserved Domains (3) summary
    PLN03134
    Location:187 → 271
    PLN03134; glycine-rich RNA-binding protein 4; Provisional
    smart00360
    Location:74 → 141
    RRM; RNA recognition motif
    COG0724
    Location:67 → 210
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  3. XM_043095177.1 → XP_042951111.1  UBP1-associated protein 2C-like

    UniProtKB/TrEMBL
    A0A8T1P3H8, A0A922IZY4
    Conserved Domains (3) summary
    PLN03134
    Location:187 → 271
    PLN03134; glycine-rich RNA-binding protein 4; Provisional
    smart00360
    Location:74 → 141
    RRM; RNA recognition motif
    COG0724
    Location:67 → 210
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.