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LOC122295197 nuclear transcription factor Y subunit A-1-like [ Carya illinoinensis ]

Gene ID: 122295197, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122295197
Gene description
nuclear transcription factor Y subunit A-1-like
Locus tag
CIPAW_14G000300
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122295197 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (24244..29131)

Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase A catalytic subunit 3 [UDP-forming]-like Neighboring gene protein FRA10AC1 Neighboring gene uncharacterized LOC122294602 Neighboring gene cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit A-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    24244..29131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043104308.1 → XP_042960242.1  nuclear transcription factor Y subunit A-1-like isoform X1

    UniProtKB/TrEMBL
    A0A8T1ND24, A0A922AFV5
    Conserved Domains (1) summary
    smart00521
    Location:168 → 229
    CBF; CCAAT-Binding transcription Factor

  2. XM_043104309.1 → XP_042960243.1  nuclear transcription factor Y subunit A-1-like isoform X1

    UniProtKB/TrEMBL
    A0A8T1ND24, A0A922AFV5
    Conserved Domains (1) summary
    smart00521
    Location:168 → 229
    CBF; CCAAT-Binding transcription Factor

  3. XM_043104310.1 → XP_042960244.1  nuclear transcription factor Y subunit A-1-like isoform X2

    UniProtKB/TrEMBL
    A0A922AFV5
    Conserved Domains (1) summary
    smart00521
    Location:119 → 180
    CBF; CCAAT-Binding transcription Factor
Nucleotide Protein
Heading Accession and Version

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