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LOC122295199 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [ Carya illinoinensis ]

Gene ID: 122295199, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122295199
Gene description
cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like
Locus tag
CIPAW_14G000500
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122295199 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (32758..34453)

Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit A-1-like Neighboring gene uncharacterized LOC122294602 Neighboring gene actin-related protein 7 Neighboring gene uncharacterized LOC122294229

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    32758..34453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043104314.1 → XP_042960248.1  cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X1

    UniProtKB/TrEMBL
    A0A8T1NH32, A0A922A8W7
    Conserved Domains (1) summary
    cl22881
    Location:20 → 193
    DNA_processg_A; DNA recombination-mediator protein A

  2. XM_043104315.1 → XP_042960249.1  cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X2

    UniProtKB/TrEMBL
    A0A922AF76
    Conserved Domains (1) summary
    cl22881
    Location:12 → 159
    DNA_processg_A; DNA recombination-mediator protein A
Nucleotide Protein
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