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LOC122295203 vesicle-associated protein 1-2-like [ Carya illinoinensis ]

Gene ID: 122295203, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122295203
Gene description
vesicle-associated protein 1-2-like
Locus tag
CIPAW_14G025700
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122295203 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (3256511..3259887)

Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122294585 Neighboring gene SPX domain-containing protein 3-like Neighboring gene phosphatidate cytidylyltransferase 4, chloroplastic Neighboring gene scarecrow-like protein 22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum-plasma membrane tethering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated protein 1-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    3256511..3259887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043104318.1 → XP_042960252.1  vesicle-associated protein 1-2-like isoform X1

    Conserved Domains (1) summary
    cl27657
    Location:40 → 236
    Motile_Sperm; MSP (Major sperm protein) domain

  2. XM_043104319.1 → XP_042960253.1  vesicle-associated protein 1-2-like isoform X2

    UniProtKB/TrEMBL
    A0A8T1NFL2
    Conserved Domains (1) summary
    pfam00635
    Location:6 → 113
    Motile_Sperm; MSP (Major sperm protein) domain
Nucleotide Protein
Heading Accession and Version

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