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LOC122295205 L-ascorbate oxidase-like [ Carya illinoinensis ]

Gene ID: 122295205, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122295205
Gene description
L-ascorbate oxidase-like
Locus tag
CIPAW_14G089800
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122295205 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (19702269..19707222, complement)

Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene UBP1-associated protein 2A-like Neighboring gene UBP1-associated protein 2A-like Neighboring gene uncharacterized LOC122293677 Neighboring gene 60S ribosomal protein L14-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasmodesma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-ascorbate oxidase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    19702269..19707222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043104322.1 → XP_042960256.1  L-ascorbate oxidase-like isoform X2

    UniProtKB/TrEMBL
    A0A8T1NIC1, A0A922AGV9
    Conserved Domains (1) summary
    TIGR03388
    Location:39 → 565
    ascorbase; L-ascorbate oxidase, plant type

  2. XM_043104321.1 → XP_042960255.1  L-ascorbate oxidase-like isoform X1

    UniProtKB/TrEMBL
    A0A8T1NCS6, A0A922AJ34
    Conserved Domains (1) summary
    TIGR03388
    Location:39 → 578
    ascorbase; L-ascorbate oxidase, plant type
Nucleotide Protein
Heading Accession and Version

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