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LOC122295221 transcription factor TGA9-like [ Carya illinoinensis ]

Gene ID: 122295221, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122295221
Gene description
transcription factor TGA9-like
Locus tag
CIPAW_14G100400
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122295221 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (25588066..25596226)

Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 5 Neighboring gene F-box/LRR-repeat protein At1g67190-like Neighboring gene uncharacterized LOC122294076 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    25588066..25596226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043104337.1 → XP_042960271.1  transcription factor TGA9-like isoform X2

    UniProtKB/TrEMBL
    A0A8T1NCY5, A0A922AJE4
    Conserved Domains (1) summary
    cd14708
    Location:195 → 247
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain

  2. XM_043104336.1 → XP_042960270.1  transcription factor TGA9-like isoform X1

    UniProtKB/TrEMBL
    A0A8T1NL94, A0A922AJ84
    Conserved Domains (1) summary
    cd14708
    Location:195 → 247
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain

  3. XM_043104338.1 → XP_042960272.1  transcription factor TGA9-like isoform X3

    UniProtKB/TrEMBL
    A0A8T1ND80, A0A922AH85
    Conserved Domains (1) summary
    cd14708
    Location:116 → 168
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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