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LOC122319407 26S proteasome non-ATPase regulatory subunit 4 homolog [ Carya illinoinensis ]

Gene ID: 122319407, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122319407
Gene description
26S proteasome non-ATPase regulatory subunit 4 homolog
Locus tag
CIPAW_08G129400
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122319407 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 8 NC_056759.1 (26732888..26738050)

Chromosome 8 - NC_056759.1Genomic Context describing neighboring genes Neighboring gene thiosulfate sulfurtransferase 18 Neighboring gene uncharacterized LOC122274559 Neighboring gene alpha-mannosidase-like Neighboring gene protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056759.1 Chromosome 8 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056759.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    26732888..26738050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043137465.1 → XP_042993399.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8T1PR70, A0A8T1PVV5
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

  2. XM_043137463.1 → XP_042993397.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8T1PR70, A0A8T1PVV5
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

  3. XM_043137464.1 → XP_042993398.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8T1PR70, A0A8T1PVV5
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

  4. XM_043137470.1 → XP_042993404.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8T1PVV5, A0A8T1PZ14
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

  5. XM_043137467.1 → XP_042993401.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8T1PVV5, A0A8T1PZ14
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

  6. XM_043137469.1 → XP_042993403.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8T1PVV5, A0A8T1PZ14
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

  7. XM_043137466.1 → XP_042993400.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8T1PUQ1, A0A8T1PVV5
    Conserved Domains (1) summary
    cd01452
    Location:1 → 188
    VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...
Nucleotide Protein
Heading Accession and Version

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