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LOC122319432 AT-hook motif nuclear-localized protein 17-like [ Carya illinoinensis ]

Gene ID: 122319432, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122319432
Gene description
AT-hook motif nuclear-localized protein 17-like
Locus tag
CIPAW_08G054900
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122319432 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 8 NC_056759.1 (6040370..6041883, complement)

Chromosome 8 - NC_056759.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein REN1-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 16-like Neighboring gene protein PELPK2-like Neighboring gene AP-4 complex subunit mu-like Neighboring gene uncharacterized LOC122318775

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056759.1 Chromosome 8 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-hook motif nuclear-localized protein 17-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056759.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    6040370..6041883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043137496.1 → XP_042993430.1  AT-hook motif nuclear-localized protein 17-like

    UniProtKB/TrEMBL
    A0A922EC80
    Conserved Domains (1) summary
    cd11378
    Location:145 → 258
    DUF296; Domain of unknown function found in archaea, bacteria, and plants
Nucleotide Protein
Heading Accession and Version

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