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ndr1 nodal-related 1 [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122326255, updated on 8-May-2024

Summary

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Gene symbol
ndr1
Gene description
nodal-related 1
See related
EnsemblRapid:ENSPRZG00000031325
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Also known as
squint
Orthologs
zebrafish all
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Genomic context

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See ndr1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 21 NC_056719.1 (5361958..5365041)

Chromosome 21 - NC_056719.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122326333 Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1A b Neighboring gene eukaryotic translation initiation factor 4E binding protein 1 Neighboring gene ankyrin 1, erythrocytic b Neighboring gene uncharacterized LOC122326052

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056719.1 Chromosome 21 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type I activin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nodal-related 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056719.1 Reference ASM1883169v1 Primary Assembly

    Range
    5361958..5365041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043220994.1 → XP_043076929.1  nodal-related 1

    Related
    ENSPRZP00000066029.1, ENSPRZT00000075843.1
    Conserved Domains (1) summary
    cd13759
    Location:287 → 389
    TGF_beta_NODAL; transforming growth factor beta (TGF-beta) like domain found in Nodal (NODAL)-related proteins
Nucleotide Protein
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