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LOC122626835 protein sine oculis [ Drosophila teissieri ]

Gene ID: 122626835, updated on 10-May-2024

Summary

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Gene symbol
LOC122626835
Gene description
protein sine oculis
See related
EnsemblRapid:LOC122626835
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila teissieri
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See LOC122626835 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Prin_Dtei_1.1 (GCF_016746235.2) 2L NC_053029.1 (20722624..20737426, complement)

Chromosome 2L - NC_053029.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2 large subunit Neighboring gene nucleolar protein 9 Neighboring gene secretory Phospholipase A2 Neighboring gene uncharacterized LOC122611391 Neighboring gene uncharacterized LOC122611955 Neighboring gene ell-associated factor Eaf Neighboring gene uncharacterized LOC122611956

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053029.1 Chromosome 2L Reference Prin_Dtei_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein sine oculis

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila teissieri Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dtei_1.1

Genomic

  1. NC_053029.1 Reference Prin_Dtei_1.1

    Range
    20722624..20737426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043784401.1 → XP_043640336.1  protein sine oculis isoform X1

    Related
    XP_043640336.1, XM_043784401.1
    Conserved Domains (1) summary
    cd00086
    Location:221 → 272
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_043784409.1 → XP_043640344.1  protein sine oculis isoform X2

    Related
    XP_043640344.1, XM_043784409.1
    Conserved Domains (1) summary
    cd00086
    Location:221 → 272
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases