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CWC27 CWC27 spliceosome associated cyclophilin [ Neogale vison (American mink) ]

Gene ID: 122919247, updated on 22-Mar-2024

Summary

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Gene symbol
CWC27
Gene description
CWC27 spliceosome associated cyclophilin
Gene type
protein coding
RefSeq status
MODEL
Organism
Neogale vison
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
Orthologs
human mouse all
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Genomic context

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See CWC27 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM_NN_V1 (GCF_020171115.1) 1 NC_058091.1 (223040382..223276301, complement)

Chromosome 1 - NC_058091.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122919287 Neighboring gene uncharacterized LOC122919280 Neighboring gene SREK1 interacting protein 1 Neighboring gene shisa like 2B Neighboring gene uncharacterized LOC122889096 Neighboring gene regulator of G protein signaling 7 binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058091.1 Chromosome 1 Reference ASM_NN_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spliceosome-associated protein CWC27 homolog
Names
Peptidyl-prolyl cis-trans isomerase CWC27 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM_NN_V1 Primary Assembly

Genomic

  1. NC_058091.1 Reference ASM_NN_V1 Primary Assembly

    Range
    223040382..223276301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044268192.1 → XP_044124127.1  spliceosome-associated protein CWC27 homolog isoform X2

    Conserved Domains (2) summary
    PTZ00121
    Location:255 → 457
    PTZ00121; MAEBL; Provisional
    cd01925
    Location:2 → 164
    cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...

  2. XM_044268185.1 → XP_044124120.1  spliceosome-associated protein CWC27 homolog isoform X1

    UniProtKB/TrEMBL
    U6CT65
    Conserved Domains (4) summary
    COG5163
    Location:240 → 377
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    PRK05035
    Location:312 → 412
    PRK05035; electron transport complex protein RnfC; Provisional
    cd01925
    Location:8 → 177
    cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...
    cd22288
    Location:376 → 428
    CWC27_CTD; C-terminal domain of spliceosome-associated protein CWC27 and similar proteins

  3. XM_044268198.1 → XP_044124133.1  spliceosome-associated protein CWC27 homolog isoform X3

    Conserved Domains (2) summary
    COG4372
    Location:307 → 402
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    cd01925
    Location:8 → 177
    cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...
Nucleotide Protein
Heading Accession and Version

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