U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHRNA6 cholinergic receptor nicotinic alpha 6 subunit [ Neogale vison (American mink) ]

Gene ID: 122919248, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CHRNA6
Gene description
cholinergic receptor nicotinic alpha 6 subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Neogale vison
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
Also known as
ACHA6
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHRNA6 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM_NN_V1 (GCF_020171115.1) 11 NC_058101.1 (173383923..173401654)

Chromosome 11 - NC_058101.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36a-like Neighboring gene THAP domain containing 1 Neighboring gene cholinergic receptor nicotinic beta 3 subunit Neighboring gene receptor expression-enhancing protein 5-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_058101.1 Chromosome 11 Reference ASM_NN_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
neuronal acetylcholine receptor subunit alpha-6
Names
Neuronal acetylcholine receptor subunit alpha-6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM_NN_V1 Primary Assembly

Genomic

  1. NC_058101.1 Reference ASM_NN_V1 Primary Assembly

    Range
    173383923..173401654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044268181.1 → XP_044124116.1  neuronal acetylcholine receptor subunit alpha-6 isoform X1

    UniProtKB/TrEMBL
    A0A8C7ARE4, A0A8C7AT02
    Conserved Domains (2) summary
    TIGR00860
    Location:34 → 484
    LIC; Cation transporter family protein
    cl28912
    Location:34 → 240
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  2. XM_044268183.1 → XP_044124118.1  neuronal acetylcholine receptor subunit alpha-6 isoform X3

    UniProtKB/TrEMBL
    U6DXU0
    Conserved Domains (2) summary
    TIGR00860
    Location:1 → 405
    LIC; Cation transporter family protein
    cl28912
    Location:1 → 160
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))

  3. XM_044268182.1 → XP_044124117.1  neuronal acetylcholine receptor subunit alpha-6 isoform X2

    UniProtKB/TrEMBL
    U6DXU0
    Conserved Domains (2) summary
    TIGR00860
    Location:27 → 394
    LIC; Cation transporter family protein
    cl28912
    Location:27 → 149
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.