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AFP alpha fetoprotein [ Neogale vison (American mink) ]

Gene ID: 122919276, updated on 22-Mar-2024

Summary

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Gene symbol
AFP
Gene description
alpha fetoprotein
Gene type
protein coding
RefSeq status
MODEL
Organism
Neogale vison
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
Also known as
FETA
Orthologs
human mouse all
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Genomic context

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See AFP in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM_NN_V1 (GCF_020171115.1) 11 NC_058101.1 (9070918..9091453, complement)

Chromosome 11 - NC_058101.1Genomic Context describing neighboring genes Neighboring gene alpha-fetoprotein-like Neighboring gene afamin Neighboring gene albumin Neighboring gene rRNA-processing protein FCF1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058101.1 Chromosome 11 Reference ASM_NN_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-fetoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM_NN_V1 Primary Assembly

Genomic

  1. NC_058101.1 Reference ASM_NN_V1 Primary Assembly

    Range
    9070918..9091453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044268216.1 → XP_044124151.1  alpha-fetoprotein

    UniProtKB/TrEMBL
    U6CQK2
    Conserved Domains (1) summary
    smart00103
    Location:404 → 592
    ALBUMIN; serum albumin
Nucleotide Protein
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