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SCLT1 sodium channel and clathrin linker 1 [ Neogale vison (American mink) ]

Gene ID: 122919296, updated on 22-Mar-2024

Summary

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Gene symbol
SCLT1
Gene description
sodium channel and clathrin linker 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neogale vison
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
Orthologs
human mouse all
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Genomic context

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See SCLT1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM_NN_V1 (GCF_020171115.1) 11 NC_058101.1 (81966794..82160431)

Chromosome 11 - NC_058101.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A thioesterase THEM4-like Neighboring gene chromosome 11 C4orf33 homolog Neighboring gene U4 spliceosomal RNA Neighboring gene jade family PHD finger 1 Neighboring gene progesterone receptor membrane component 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058101.1 Chromosome 11 Reference ASM_NN_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clustering of voltage-gated sodium channels IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium channel and clathrin linker 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM_NN_V1 Primary Assembly

Genomic

  1. NC_058101.1 Reference ASM_NN_V1 Primary Assembly

    Range
    81966794..82160431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044268234.1 → XP_044124169.1  sodium channel and clathrin linker 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7AKY0
    Conserved Domains (2) summary
    TIGR02168
    Location:214 → 537
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:65 → 323
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  2. XM_044268233.1 → XP_044124168.1  sodium channel and clathrin linker 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7AKY0, U6CT66
    Conserved Domains (2) summary
    TIGR02168
    Location:214 → 537
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:65 → 323
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  3. XM_044268236.1 → XP_044124171.1  sodium channel and clathrin linker 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7AKY0
    Conserved Domains (2) summary
    TIGR02168
    Location:214 → 537
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:65 → 323
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  4. XM_044268237.1 → XP_044124172.1  sodium channel and clathrin linker 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C7AKY0
    Conserved Domains (2) summary
    COG1196
    Location:131 → 445
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02169
    Location:269 → 650
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  5. XM_044268238.1 → XP_044124173.1  sodium channel and clathrin linker 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C7AKY0
    Conserved Domains (1) summary
    pfam15964
    Location:56 → 608
    CCCAP; Centrosomal colon cancer autoantigen protein family

  6. XM_044268239.1 → XP_044124174.1  sodium channel and clathrin linker 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C7AKY0
    Conserved Domains (2) summary
    TIGR02168
    Location:214 → 537
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:65 → 323
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

RNA

  1. XR_006386785.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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