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rpl23 ribosomal protein L23 [ Thunnus albacares (yellowfin tuna) ]

Gene ID: 122966334, updated on 22-Mar-2024

Summary

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Gene symbol
rpl23
Gene description
ribosomal protein L23
See related
EnsemblRapid:ENSTABG00005008690
Gene type
protein coding
RefSeq status
MODEL
Organism
Thunnus albacares
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
Orthologs
human zebrafish all
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Genomic context

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See rpl23 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fThuAlb1.1 (GCF_914725855.1) 17 NC_058122.1 (4022352..4026753)

Chromosome 17 - NC_058122.1Genomic Context describing neighboring genes Neighboring gene cytosolic phospholipase A2 gamma-like Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene carbonic anhydrase-related protein 10-like Neighboring gene von Willebrand factor C domain-containing protein 2-like Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058122.1 Chromosome 17 Reference fThuAlb1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. Ciezarek AG, et al. Genome Biol Evol, 2016 Oct 5. PMID 27614233, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables large ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fThuAlb1.1

Genomic

  1. NC_058122.1 Reference fThuAlb1.1

    Range
    4022352..4026753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044330454.1 → XP_044186389.1  60S ribosomal protein L23

    Related
    ENSTABP00005021409.1, ENSTABT00005021609.1
    Conserved Domains (1) summary
    PTZ00054
    Location:2 → 139
    PTZ00054; 60S ribosomal protein L23; Provisional
Nucleotide Protein
Heading Accession and Version

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