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tnrc18 trinucleotide repeat containing 18 [ Thunnus albacares (yellowfin tuna) ]

Gene ID: 122967500, updated on 22-Mar-2024

Summary

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Gene symbol
tnrc18
Gene description
trinucleotide repeat containing 18
See related
EnsemblRapid:ENSTABG00005014946
Gene type
protein coding
RefSeq status
MODEL
Organism
Thunnus albacares
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
Orthologs
human zebrafish all
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Genomic context

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See tnrc18 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
32
Annotation release Status Assembly Chr Location
100 current fThuAlb1.1 (GCF_914725855.1) 17 NC_058122.1 (8616908..8673594, complement)

Chromosome 17 - NC_058122.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit f Neighboring gene solute carrier family 29 member 4a Neighboring gene actin, beta 2 Neighboring gene fascin actin-bundling protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058122.1 Chromosome 17 Reference fThuAlb1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. Ciezarek AG, et al. Genome Biol Evol, 2016 Oct 5. PMID 27614233, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 18 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fThuAlb1.1

Genomic

  1. NC_058122.1 Reference fThuAlb1.1

    Range
    8616908..8673594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044332176.1 → XP_044188111.1  trinucleotide repeat-containing gene 18 protein isoform X1

    Conserved Domains (2) summary
    cd04714
    Location:2955 → 3098
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    pfam17380
    Location:1437 → 1569
    DUF5401; Family of unknown function (DUF5401)

  2. XM_044332175.1 → XP_044188110.1  trinucleotide repeat-containing gene 18 protein isoform X1

    Related
    ENSTABP00005038045.1, ENSTABT00005038455.1
    Conserved Domains (2) summary
    cd04714
    Location:2955 → 3098
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    pfam17380
    Location:1437 → 1569
    DUF5401; Family of unknown function (DUF5401)

  3. XM_044332177.1 → XP_044188112.1  trinucleotide repeat-containing gene 18 protein isoform X2

    Conserved Domains (2) summary
    cd04714
    Location:2953 → 3096
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    pfam17380
    Location:1435 → 1567
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein
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