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itga2b integrin, alpha 2b [ Thunnus albacares (yellowfin tuna) ]

Gene ID: 122967811, updated on 22-Mar-2024

Summary

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Gene symbol
itga2b
Gene description
integrin, alpha 2b
See related
EnsemblRapid:ENSTABG00005000073
Gene type
protein coding
RefSeq status
MODEL
Organism
Thunnus albacares
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
Orthologs
zebrafish all
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Genomic context

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See itga2b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
31
Annotation release Status Assembly Chr Location
100 current fThuAlb1.1 (GCF_914725855.1) 17 NC_058122.1 (30352552..30375426)

Chromosome 17 - NC_058122.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein tau b Neighboring gene corticotropin releasing hormone receptor 1 Neighboring gene synaptogyrin 1a Neighboring gene uncharacterized LOC122967495 Neighboring gene interferon phi 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058122.1 Chromosome 17 Reference fThuAlb1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-IIb

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fThuAlb1.1

Genomic

  1. NC_058122.1 Reference fThuAlb1.1

    Range
    30352552..30375426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044332637.1 → XP_044188572.1  integrin alpha-IIb isoform X1

    Related
    ENSTABP00005000099.1, ENSTABT00005000128.1
    Conserved Domains (1) summary
    smart00191
    Location:378 → 432
    Int_alpha; Integrin alpha (beta-propellor repeats)

  2. XM_044332638.1 → XP_044188573.1  integrin alpha-IIb isoform X2

    Conserved Domains (1) summary
    smart00191
    Location:344 → 398
    Int_alpha; Integrin alpha (beta-propellor repeats)
Nucleotide Protein
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