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tor3a torsin family 3, member A [ Thunnus albacares (yellowfin tuna) ]

Gene ID: 122988713, updated on 22-Mar-2024

Summary

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Gene symbol
tor3a
Gene description
torsin family 3, member A
See related
EnsemblRapid:ENSTABG00005025907
Gene type
protein coding
RefSeq status
MODEL
Organism
Thunnus albacares
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
Orthologs
human zebrafish all
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Genomic context

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See tor3a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
100 current fThuAlb1.1 (GCF_914725855.1) 9 NC_058114.1 (19705768..19717017)

Chromosome 9 - NC_058114.1Genomic Context describing neighboring genes Neighboring gene c-abl oncogene 2, non-receptor tyrosine kinase Neighboring gene oxysterol binding protein-like 9 Neighboring gene small nucleolar RNA SNORD74 Neighboring gene small nucleolar RNA SNORD75 Neighboring gene small nucleolar RNA SNORD75 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene small nucleolar RNA SNORD79 Neighboring gene small nucleolar RNA snR60/Z15/Z230/Z193/J17 Neighboring gene small nucleolar RNA snR60/Z15/Z230/Z193/J17 Neighboring gene small nucleolar RNA SNORD78 Neighboring gene small nucleolar RNA SNORD47 Neighboring gene calreticulin Neighboring gene epidermal growth factor receptor pathway substrate 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058114.1 Chromosome 9 Reference fThuAlb1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. Ciezarek AG, et al. Genome Biol Evol, 2016 Oct 5. PMID 27614233, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fThuAlb1.1

Genomic

  1. NC_058114.1 Reference fThuAlb1.1

    Range
    19705768..19717017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044361240.1 → XP_044217175.1  torsin-3A

    Conserved Domains (1) summary
    COG0542
    Location:95 → 309
    ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]

  2. XM_044361241.1 → XP_044217176.1  torsin-3A

    Related
    ENSTABP00005059738.1, ENSTABT00005063049.1
    Conserved Domains (1) summary
    COG0542
    Location:95 → 309
    ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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