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ZBTB16 zinc finger and BTB domain containing 16 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123036874, updated on 22-Mar-2024

Summary

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Gene symbol
ZBTB16
Gene description
zinc finger and BTB domain containing 16
Locus tag
EYD10_16338
See related
Ensembl:ENSVKKG00000010532
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Also known as
zbtb16a
Orthologs
human mouse all
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Genomic context

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See ZBTB16 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336520.1 (1130437..1282378)

NW_025336520.1Genomic Context describing neighboring genes Neighboring gene NXPE family member 4-like Neighboring gene RNA binding motif protein 7 Neighboring gene uncharacterized LOC123036875 Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene ubiquitin specific peptidase 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025336520 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 16
Names
Zinc finger and BTB domain-containing protein 16-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025336520.1 Reference ASM479886v1

    Range
    1130437..1282378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044456380.1 → XP_044312315.1  zinc finger and BTB domain-containing protein 16 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:457 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:557 → 577
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:16 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  2. XM_044456379.1 → XP_044312314.1  zinc finger and BTB domain-containing protein 16 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:457 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:557 → 577
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:16 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  3. XM_044456381.1 → XP_044312316.1  zinc finger and BTB domain-containing protein 16 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:457 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:557 → 577
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:16 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  4. XM_044456384.1 → XP_044312319.1  zinc finger and BTB domain-containing protein 16 isoform X4

    UniProtKB/TrEMBL
    A0A8D2L1P1
    Related
    ENSVKKP00000015385.1, ENSVKKT00000015755.1
    Conserved Domains (3) summary
    COG5048
    Location:441 → 615
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541 → 561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:16 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  5. XM_044456382.1 → XP_044312317.1  zinc finger and BTB domain-containing protein 16 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:443 → 602
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:528 → 548
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:443 → 463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:16 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  6. XM_044456383.1 → XP_044312318.1  zinc finger and BTB domain-containing protein 16 isoform X3

    UniProtKB/TrEMBL
    A0A8D2Q2R1
    Related
    ENSVKKP00000015387.1, ENSVKKT00000015757.1
    Conserved Domains (4) summary
    COG5048
    Location:427 → 586
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:512 → 532
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:399 → 419
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:16 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein
Heading Accession and Version

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