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CBX4 chromobox 4 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123036919, updated on 22-Mar-2024

Summary

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Gene symbol
CBX4
Gene description
chromobox 4
Locus tag
EYD10_16402
See related
Ensembl:ENSVKKG00000016733
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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See CBX4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336531.1 (2161092..2167165)

NW_025336531.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 16 Neighboring gene RecQ mediated genome instability 2 Neighboring gene chromobox protein homolog 2-like Neighboring gene chromobox 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025336531 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase CBX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025336531.1 Reference ASM479886v1

    Range
    2161092..2167165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044456454.1 → XP_044312389.1  E3 SUMO-protein ligase CBX4

    UniProtKB/TrEMBL
    A0A8D2LQX5
    Related
    ENSVKKP00000025497.1, ENSVKKT00000026112.1
    Conserved Domains (3) summary
    PHA03307
    Location:283 → 455
    PHA03307; transcriptional regulator ICP4; Provisional
    cd18645
    Location:8 → 62
    CD_Cbx4; chromodomain of chromobox homolog 4
    pfam17218
    Location:518 → 539
    CBX7_C; CBX family C-terminal motif
Nucleotide Protein
Heading Accession and Version

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